PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g046549m

Common Name

CISIN_1g046549mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 251aa MW: 27101.8 Da PI: 8.5855

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g046549m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.9e-39	17	76	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalrn+P+Ggg+rk+++++ orange1.1g046549m 17 SEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNIPIGGGTRKSNTKK 76 6899***************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	11	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MQDPATFNPM KPHFPESEQL KCPRCESTNT KFCYYNNYNL SQPRHFCKNC RRYWTRGGAL 60 RNIPIGGGTR KSNTKKRQKP DPDPSRSNPT RKSQETANTQ SMLQAAATTS TSSQEPAVTL 120 PGAVARESGT EHDPRRLYGL PLDQDHKMLD ITGSFSSLLA SNGGLGSVLD GITPNGSGFK 180 MVQMGGFGEN FGSDQSLDLI SVRGSGSQNQ GNNNGGESFM QSGNNDSSCW SGGSNGWPDL 240 AIYTPSSNFQ *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.16622	0.0	vegetative meristem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426477.1	0.0	hypothetical protein CICLE_v10026336mg
Swissprot	O82155	1e-43	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A067EU65	0.0	A0A067EU65_CITSI; Uncharacterized protein
TrEMBL	V4SGK2	0.0	V4SGK2_9R
STRING	POPTR_0003s02890.1	2e-80	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-41	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	orange1.1g046549m